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<li class="navelem"><b>claragenomics</b></li><li class="navelem"><a class="el" href="classclaragenomics_1_1Sequence.html">Sequence</a></li>  </ul>
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<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
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<div class="title">claragenomics::Sequence Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span><div class="ingroups"><a class="el" href="group__cudamapper.html">CUDA mapper package</a></div></div>  </div>
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<p><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> - represents an individual read (name, DNA nucleotides etc)  
 <a href="classclaragenomics_1_1Sequence.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="sequence_8hpp_source.html">sequence.hpp</a>&gt;</code></p>
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Public Member Functions</h2></td></tr>
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virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classclaragenomics_1_1Sequence.html#a2880569ac1fe954fe830928f65d1046b">~Sequence</a> ()=default</td></tr>
<tr class="memdesc:a2880569ac1fe954fe830928f65d1046b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for <a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a>. <br /></td></tr>
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<tr class="memitem:a2c40a6a9563f87f412b5e8ca1b0bfb1a"><td class="memItemLeft" align="right" valign="top"><a id="a2c40a6a9563f87f412b5e8ca1b0bfb1a"></a>
virtual const std::string &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classclaragenomics_1_1Sequence.html#a2c40a6a9563f87f412b5e8ca1b0bfb1a">name</a> () const =0</td></tr>
<tr class="memdesc:a2c40a6a9563f87f412b5e8ca1b0bfb1a"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> name. <br /></td></tr>
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virtual const std::string &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classclaragenomics_1_1Sequence.html#a6defcabdbba97c1b409c1662cf63c6b6">data</a> () const =0</td></tr>
<tr class="memdesc:a6defcabdbba97c1b409c1662cf63c6b6"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> data. Typically this is a sequence of bases A,C,T,G. <br /></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:acd6d2440af638199ea1218e2388f2b2f"><td class="memItemLeft" align="right" valign="top">static std::unique_ptr&lt; <a class="el" href="classclaragenomics_1_1Sequence.html">Sequence</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classclaragenomics_1_1Sequence.html#acd6d2440af638199ea1218e2388f2b2f">create_sequence</a> (const char *<a class="el" href="classclaragenomics_1_1Sequence.html#a2c40a6a9563f87f412b5e8ca1b0bfb1a">name</a>, uint32_t name_length, const char *<a class="el" href="classclaragenomics_1_1Sequence.html#a6defcabdbba97c1b409c1662cf63c6b6">data</a>, uint32_t data_length)</td></tr>
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<tr class="memitem:a21cdee2e5238103b35daf5eb41981d33"><td class="memItemLeft" align="right" valign="top">static std::unique_ptr&lt; <a class="el" href="classclaragenomics_1_1Sequence.html">Sequence</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classclaragenomics_1_1Sequence.html#a21cdee2e5238103b35daf5eb41981d33">create_sequence</a> (const std::string &amp;<a class="el" href="classclaragenomics_1_1Sequence.html#a2c40a6a9563f87f412b5e8ca1b0bfb1a">name</a>, const std::string &amp;<a class="el" href="classclaragenomics_1_1Sequence.html#a6defcabdbba97c1b409c1662cf63c6b6">data</a>)</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> - represents an individual read (name, DNA nucleotides etc) </p>
</div><h2 class="groupheader">Member Function Documentation</h2>
<a id="acd6d2440af638199ea1218e2388f2b2f"></a>
<h2 class="memtitle"><span class="permalink"><a href="#acd6d2440af638199ea1218e2388f2b2f">&#9670;&nbsp;</a></span>create_sequence() <span class="overload">[1/2]</span></h2>

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          <td class="memname">static std::unique_ptr&lt;<a class="el" href="classclaragenomics_1_1Sequence.html">Sequence</a>&gt; claragenomics::Sequence::create_sequence </td>
          <td>(</td>
          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>name</em>, </td>
        </tr>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">uint32_t&#160;</td>
          <td class="paramname"><em>name_length</em>, </td>
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          <td class="paramkey"></td>
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          <td class="paramtype">const char *&#160;</td>
          <td class="paramname"><em>data</em>, </td>
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          <td class="paramkey"></td>
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          <td class="paramtype">uint32_t&#160;</td>
          <td class="paramname"><em>data_length</em>&#160;</td>
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          <td></td>
          <td>)</td>
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<p>create_sequence - return a <a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> object </p><dl class="section return"><dt>Returns</dt><dd><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> implementation </dd></dl>

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<a id="a21cdee2e5238103b35daf5eb41981d33"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a21cdee2e5238103b35daf5eb41981d33">&#9670;&nbsp;</a></span>create_sequence() <span class="overload">[2/2]</span></h2>

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          <td class="memname">static std::unique_ptr&lt;<a class="el" href="classclaragenomics_1_1Sequence.html">Sequence</a>&gt; claragenomics::Sequence::create_sequence </td>
          <td>(</td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>name</em>, </td>
        </tr>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>data</em>&#160;</td>
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          <td>)</td>
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<p>create_sequence - return a <a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> object </p><dl class="section return"><dt>Returns</dt><dd><a class="el" href="classclaragenomics_1_1Sequence.html" title="Sequence - represents an individual read (name, DNA nucleotides etc)">Sequence</a> implementation </dd></dl>

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<hr/>The documentation for this class was generated from the following file:<ul>
<li>cudamapper/include/cudamapper/<a class="el" href="sequence_8hpp_source.html">sequence.hpp</a></li>
</ul>
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